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1.
BMJ Open Qual ; 12(2)2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37311623

RESUMEN

BACKGROUND: Interprofessional primary care (PC) teams are key to the provision of high-quality care. PC providers often 'share' patients (eg, a patient may see multiple providers in the same clinic), resulting in between-visit interdependence between providers. However, concern remains that PC provider interdependence will reduce quality of care, causing some organisations to hesitate in creating multiple provider teams. If PC provider teams are formalised, the PC usual provider of care (UPC) type (physician, nurse practitioner (NP) or physician assistant/associate (PA)) should be determined for patients with varying levels of medical complexity. OBJECTIVE: To evaluate the impact of PC provider interdependence, UPC type and patient complexity on diabetes-specific outcomes for adult patients with diabetes. DESIGN: Cohort study using electronic health record data from 26 PC practices in central North Carolina, USA. PARTICIPANTS: Adult patients with diabetes (N=10 498) who received PC in 2016 and 2017. OUTCOME: Testing for diabetes control, testing for lipid levels, mean glycated haemoglobin (HbA1c) values and mean low-density lipoprotein (LDL) values in 2017. RESULTS: Receipt of guideline recommended testing was high (72% for HbA1c and 66% for LDL testing), HbA1c values were 7.5% and LDL values were 88.5 mg/dL. When controlling for a range of patient and panel level variables, increases in PC provider interdependence were not significantly associated with diabetes-specific outcomes. Similarly, there were no significant differences in the diabetes outcomes for patients with NP/PA UPCs when compared with physicians. The number and type of a patient's chronic conditions did impact the receipt of testing, but not average values for HbA1c and LDL. CONCLUSIONS: A range of UPC types on PC multiple provider teams can deliver guideline-recommended diabetes care. However, the number and type of a patient's chronic conditions alone impacted the receipt of testing, but not average values for HbA1c and LDL.


Asunto(s)
Diabetes Mellitus , Adulto , Humanos , Estudios de Cohortes , Hemoglobina Glucada , Diabetes Mellitus/terapia , Instituciones de Atención Ambulatoria , Atención Primaria de Salud
2.
JAAPA ; 36(1): 32-40, 2023 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-36484712

RESUMEN

ABSTRACT: Efforts to improve access to high-quality, efficient primary care have highlighted the need for team-based care. Most primary care teams are designed to maintain continuity of care between patients and primary care providers (PCPs), because continuity of care can improve some patient outcomes. However, PCPs are interdependent because they care for, or share, patients. PCP interdependence, and its association with continuity of care, is not well described. This study describes a measure of PCP interdependence. We also evaluate the association between patient and panel characteristics, including PCP interdependence. Our results found that the extent of interdependence between PCPs in the same clinic varies widely. A range of patient and panel characteristics affect continuity of care, including patient complexity and PCP interdependence. These results suggest that continuity of care for complex patients is sensitive to panel characteristics, including PCP interdependence and panel size. This information can be used by primary care organizations for evidence-based team design.


Asunto(s)
Continuidad de la Atención al Paciente , Atención Primaria de Salud , Humanos , Atención Primaria de Salud/métodos , Calidad de la Atención de Salud , Instituciones de Atención Ambulatoria
3.
JAAPA ; 35(2): 1-10, 2022 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-34985006

RESUMEN

OBJECTIVE: Increased demand for quality primary care and value-based payment has prompted interest in implementing primary care teams. Evidence-based recommendations for implementing teams will be critical to successful PA participation. This study sought to describe how primary care providers (PCPs) define team membership boundaries and coordinate tasks. METHODS: This mixed-methods study included 28 PCPs from a primary care network. We analyzed survey data using descriptive statistics and interview data using content analysis. RESULTS: Ninety-six percent of PCPs reported team membership. Team models fell into one of five categories. The predominant coordination mechanism differed by whether coordination was required in a visit or between visits. CONCLUSIONS: Team-based primary care is a strategy for improving access to quality primary care. Most PCPs define team membership based on within-visit task interdependencies. Our findings suggest that team-based interventions can focus on clarifying team membership, increasing interaction between clinicians, and enhancing the electronic health record to facilitate between-visit coordination.


Asunto(s)
Registros Electrónicos de Salud , Atención Primaria de Salud , Personal de Salud , Humanos , Grupo de Atención al Paciente , Calidad de la Atención de Salud , Encuestas y Cuestionarios
4.
Prim Care ; 46(4): 515-527, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31655748

RESUMEN

Lean thinking is a leadership, management, and operational approach for continuous improvement. Originally pioneered in Toyota's automobile manufacturing, Lean has now been implemented by health care to focus on improving care to deliver the greatest value for patients and providers. Lean thinking embodies 5 key principles that underpin the thinking and behaviors that are consistent with this management approach: respect for people, leading with humility, pursue perfection, embrace scientific thinking, relentless focus on process improvement. Making the transformation to a Lean organization can be supported by a training program comprising a series of Foundation courses that serves as an introduction.


Asunto(s)
Eficiencia Organizacional , Atención Primaria de Salud/organización & administración , Educación Profesional , Liderazgo , Estudios de Casos Organizacionales , Cultura Organizacional , Mejoramiento de la Calidad , Gestión de la Calidad Total
5.
J Telemed Telecare ; 25(3): 142-150, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29285981

RESUMEN

INTRODUCTION: Health systems are seeking innovative solutions to improve specialty care access. Electronic consultations (eConsults) allow specialists to provide formal clinical recommendations to primary care providers (PCPs) based on patient chart review, without a face-to-face visit. METHODS: We implemented a nephrology eConsult pilot program within a large, academic primary care practice to facilitate timely communication between nephrologists and PCPs. We used primary care referral data to compare wait times and completion rates between traditional referrals and eConsults. We surveyed PCPs to assess satisfaction with the program. RESULTS: For traditional nephrology referrals placed during the study period (July 2016-March 2017), there was a 51-day median appointment wait time and a 40.9% referral completion rate. For eConsults, there was a median nephrologist response time of one day and a 100% completion rate; 67.5% of eConsults did not require a subsequent face-to-face specialty appointment. For eConsults that were converted to an in-person visit, the median wait time and completion rate were 40 days and 73.1%, respectively. Compared to traditional referrals placed during the study period, eConsults converted to in-person visits were more likely to be completed ( p = 0.001). Survey responses revealed that PCPs were highly satisfied with the program and consider the quick turnaround time as the greatest benefit. DISCUSSION: Our eConsult pilot program reduced nephrology wait times and significantly increased referral completion rates. In large integrated health systems, eConsults have considerable potential to improve access to specialty care, reduce unnecessary appointments, and optimize the patient population being seen by specialists.


Asunto(s)
Nefrología/organización & administración , Atención Primaria de Salud/organización & administración , Consulta Remota/organización & administración , Citas y Horarios , Accesibilidad a los Servicios de Salud/organización & administración , Accesibilidad a los Servicios de Salud/estadística & datos numéricos , Humanos , Proyectos Piloto , Derivación y Consulta/organización & administración , Derivación y Consulta/estadística & datos numéricos , Encuestas y Cuestionarios , Listas de Espera
6.
Nat Commun ; 9(1): 3176, 2018 08 09.
Artículo en Inglés | MEDLINE | ID: mdl-30093609

RESUMEN

How ice sheets respond to changes in their grounding line is important in understanding ice sheet vulnerability to climate and ocean changes. The interplay between regional grounding line change and potentially diverse ice flow behaviour of contributing catchments is relevant to an ice sheet's stability and resilience to change. At the last glacial maximum, marine-based ice streams in the western Ross Sea were fed by numerous catchments draining the East Antarctic Ice Sheet. Here we present geomorphological and acoustic stratigraphic evidence of ice sheet reorganisation in the South Victoria Land (SVL) sector of the western Ross Sea. The opening of a grounding line embayment unzipped ice sheet sub-sectors, enabled an ice flow direction change and triggered enhanced flow from SVL outlet glaciers. These relatively small catchments behaved independently of regional grounding line retreat, instead driving an ice sheet readvance that delivered a significant volume of ice to the ocean and was sustained for centuries.

7.
J Gen Intern Med ; 33(5): 715-721, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29532299

RESUMEN

PURPOSE: Ideally, a referral from a primary care physician (PCP) to a specialist results in a completed specialty appointment with results available to the PCP. This is defined as "closing the referral loop." As health systems grow more complex, regulatory bodies increase vigilance, and reimbursement shifts towards value, closing the referral loop becomes a patient safety, regulatory, and financial imperative. OBJECTIVE/DESIGN: To assess the ability of a large health system to close the referral loop, we used electronic medical record (EMR)-generated data to analyze referrals from a large primary care network to 20 high-volume specialties between July 1, 2015 and June 30, 2016. MAIN MEASURES: The primary metric was documented specialist appointment completion rate. Explanatory analyses included documented appointment scheduling rate, individual clinic differences, appointment wait times, and geographic distance to appointments. KEY RESULTS: Of the 103,737 analyzed referral scheduling attempts, only 36,072 (34.8%) resulted in documented complete appointments. Low documented appointment scheduling rates (38.9% of scheduling attempts lacked appointment dates), individual clinic differences in closing the referral loop, and significant differences in wait times and distances to specialists between complete and incomplete appointments drove this gap. Other notable findings include high variation in wait times among specialties and correlation between high wait times and low documented appointment completion rates. CONCLUSIONS: The rate of closing the referral loop in this health system is low. Low appointment scheduling rates, individual clinic differences, and patient access issues of wait times and geographic proximity explain much of the gap. This problem is likely common among large health systems with complex provider networks and referral scheduling. Strategies that improve scheduling, decrease variation among clinics, and improve patient access will likely improve rates of closing the referral loop. More research is necessary to determine the impact of these changes and other potential driving factors.


Asunto(s)
Prestación Integrada de Atención de Salud/normas , Atención Primaria de Salud/métodos , Derivación y Consulta/estadística & datos numéricos , Citas y Horarios , Prestación Integrada de Atención de Salud/estadística & datos numéricos , Humanos
8.
Ther Adv Urol ; 10(1): 11-16, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29344092

RESUMEN

Prostate-specific antigen (PSA) screening for prostate cancer remains a controversial topic, particularly in the primary care community. Our multidisciplinary prostate screening panel at Duke University Health System, USA created a nuanced PSA screening algorithm, implemented it into the Electronic Health Record of Duke Primary Care, and conducted outreach meetings with primary care practices to support its rollout. Through this project, we identified areas of concern among primary care clinicians regarding PSA screening that we structured into two major categories: ideological opposition and logistical opposition. We outlined specific concerns in each major category and described how our team responded to those concerns. As communication between primary care clinicians and prostate specialists is vital to the success and safety of PSA screening programs, we hope that describing primary care concerns and our responses to them will help other health systems thoughtfully and efficiently implement appropriate PSA screening programs moving forward.

9.
Proc Natl Acad Sci U S A ; 113(9): 2354-9, 2016 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-26884201

RESUMEN

The stability of modern ice shelves is threatened by atmospheric and oceanic warming. The geologic record of formerly glaciated continental shelves provides a window into the past of how ice shelves responded to a warming climate. Fields of deep (-560 m), linear iceberg furrows on the outer, western Ross Sea continental shelf record an early post-Last Glacial Maximum episode of ice-shelf collapse that was followed by continuous retreat of the grounding line for ∼200 km. Runaway grounding line conditions culminated once the ice became pinned on shallow banks in the western Ross Sea. This early episode of ice-shelf collapse is not observed in the eastern Ross Sea, where more episodic grounding line retreat took place. More widespread (∼280,000 km(2)) retreat of the ancestral Ross Ice Shelf occurred during the late Holocene. This event is recorded in sediment cores by a shift from terrigenous glacimarine mud to diatomaceous open-marine sediment as well as an increase in radiogenic beryllium ((10)Be) concentrations. The timing of ice-shelf breakup is constrained by compound specific radiocarbon ages, the first application of this technique systematically applied to Antarctic marine sediments. Breakup initiated around 5 ka, with the ice shelf reaching its current configuration ∼1.5 ka. In the eastern Ross Sea, the ice shelf retreated up to 100 km in about a thousand years. Three-dimensional thermodynamic ice-shelf/ocean modeling results and comparison with ice-core records indicate that ice-shelf breakup resulted from combined atmospheric warming and warm ocean currents impinging onto the continental shelf.

10.
AMIA Annu Symp Proc ; 2016: 686-695, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-28269865

RESUMEN

The Chronic Care Model (CCM) is a promising framework for improving population health, but little is known regarding the long-term impact of scalable, informatics-enabled interventions based on this model. To address this challenge, this study evaluated the long-term impact of implementing a scalable, electronic health record (EHR)- enabled, and CCM-based population health program to replace a labor-intensive legacy program in 18 primary care practices. Interventions included point-of-care decision support, quality reporting, team-based care, patient engagement, and provider education. Among 6,768 patients with diabetes receiving care over 4 years, hemoglobin A1c levels remained stable during the 2-year pre-intervention and post-intervention periods (0.03% and 0% increases, respectively), compared to a 0.42% increase expected based on A1c progression observed in the United Kingdom Prospective Diabetes Study long-term outcomes cohort. The results indicate that an EHR-enabled, team- based, and scalable population health strategy based on the CCM may be effective and efficient for managing population health.


Asunto(s)
Diabetes Mellitus/terapia , Registros Electrónicos de Salud , Diabetes Mellitus/sangre , Hemoglobina Glucada/análisis , Humanos , Cuidados a Largo Plazo , Grupo de Atención al Paciente , Sistemas de Atención de Punto , Atención Primaria de Salud , Estudios Prospectivos , Reino Unido
11.
Proc Natl Acad Sci U S A ; 108(28): 11356-60, 2011 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-21709269

RESUMEN

The Antarctic Peninsula is considered to be the last region of Antarctica to have been fully glaciated as a result of Cenozoic climatic cooling. As such, it was likely the last refugium for plants and animals that had inhabited the continent since it separated from the Gondwana supercontinent. Drill cores and seismic data acquired during two cruises (SHALDRIL I and II) in the northernmost Peninsula region yield a record that, when combined with existing data, indicates progressive cooling and associated changes in terrestrial vegetation over the course of the past 37 million years. Mountain glaciation began in the latest Eocene (approximately 37-34 Ma), contemporaneous with glaciation elsewhere on the continent and a reduction in atmospheric CO(2) concentrations. This climate cooling was accompanied by a decrease in diversity of the angiosperm-dominated vegetation that inhabited the northern peninsula during the Eocene. A mosaic of southern beech and conifer-dominated woodlands and tundra continued to occupy the region during the Oligocene (approximately 34-23 Ma). By the middle Miocene (approximately 16-11.6 Ma), localized pockets of limited tundra still existed at least until 12.8 Ma. The transition from temperate, alpine glaciation to a dynamic, polythermal ice sheet took place during the middle Miocene. The northernmost Peninsula was overridden by an ice sheet in the early Pliocene (approximately 5.3-3.6 Ma). The long cooling history of the peninsula is consistent with the extended timescales of tectonic evolution of the Antarctic margin, involving the opening of ocean passageways and associated establishment of circumpolar circulation.


Asunto(s)
Evolución Biológica , Cambio Climático/historia , Cubierta de Hielo , Animales , Regiones Antárticas , Clima Frío , Historia Antigua , Plantas
12.
Nucleic Acids Res ; 39(Database issue): D225-9, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21109532

RESUMEN

NCBI's Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints. CDD includes manually curated domain models that make use of protein 3D structure to refine domain models and provide insights into sequence/structure/function relationships. Manually curated models are organized hierarchically if they describe domain families that are clearly related by common descent. As CDD also imports domain family models from a variety of external sources, it is a partially redundant collection. To simplify protein annotation, redundant models and models describing homologous families are clustered into superfamilies. By default, domain footprints are annotated with the corresponding superfamily designation, on top of which specific annotation may indicate high-confidence assignment of family membership. Pre-computed domain annotation is available for proteins in the Entrez/Protein dataset, and a novel interface, Batch CD-Search, allows the computation and download of annotation for large sets of protein queries. CDD can be accessed via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml.


Asunto(s)
Bases de Datos de Proteínas , Estructura Terciaria de Proteína , Secuencia de Aminoácidos , Secuencia Conservada , Modelos Biológicos , Proteínas/clasificación , Análisis de Secuencia de Proteína
13.
Nucleic Acids Res ; 37(Database issue): D205-10, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-18984618

RESUMEN

NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The collection can be accessed at http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml, and is also part of NCBI's Entrez query and retrieval system, cross-linked to numerous other resources. CDD provides annotation of domain footprints and conserved functional sites on protein sequences. Precalculated domain annotation can be retrieved for protein sequences tracked in NCBI's Entrez system, and CDD's collection of models can be queried with novel protein sequences via the CD-Search service at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi. Starting with the latest version of CDD, v2.14, information from redundant and homologous domain models is summarized at a superfamily level, and domain annotation on proteins is flagged as either 'specific' (identifying molecular function with high confidence) or as 'non-specific' (identifying superfamily membership only).


Asunto(s)
Bases de Datos de Proteínas , Estructura Terciaria de Proteína , Secuencia de Aminoácidos , Secuencia Conservada , Proteínas/clasificación , Alineación de Secuencia , Análisis de Secuencia de Proteína
15.
Science ; 315(5820): 1803-4, 2007 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-17395818
16.
BJU Int ; 99(2): 355-9, 2007 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-17313424

RESUMEN

OBJECTIVES: To assess the validity of our observational experience that a short course of oral prednisolone therapy might be of value in the management of symptoms of chronic pelvic pain syndrome (CPPS) in men. PATIENTS AND METHODS: Twenty-one men with CPPS (inflammatory or non-inflammatory) for > or =6 months, and who had failed to improve with standard antibiotic therapy, were randomized to receive either a 1-month reducing course of oral prednisolone (nine) or an equivalent placebo regimen (12 men). The outcome measures used were the McGill Pain Questionnaire, the Hospital Anxiety and Depression Scale (HADS), General Health Questionnaire-30 (GHQ-30) and the National Institute of Health Chronic Prostatitis Symptom Index (NIH-CPSI), which were completed at baseline and 3 months. RESULTS: Outcomes were analysed for the 18 patients (six treated, 12 placebo) who completed the 3 months of follow-up. At both baseline and 3 months, respectively, there was no statistically significant difference between the groups in the NIH-CPSI total score (P = 0.48 and 0.62; Mann-Whitney U-test), or in the HADS (anxiety, P = 0.85 and 0.67; depression P = 0.96 and 0.74), and there was no significant improvement or deterioration over time. Although not statistically significant, there was a trend to improvement in the depression score for the active group (P = 0.13). However, the clinical significance is doubtful, as both baseline and follow-up depression scores were within the normal range. No patient had clinically negative changes in depression. A 3-month follow-up analysis was not possible for the McGill Pain Questionnaire or GHQ-30 as not all patients completed the questionnaire. CONCLUSIONS: Whilst the study showed no clinical benefit of using corticosteroids in the management of CPPS, the few patients recruited limited the validity of firm conclusions from the data. There was a trend towards an improvement of depression levels amongst subjects. The study highlights the difficulties of recruitment and illustrates the complex psychological profiles of patients with CPPS.


Asunto(s)
Antiinflamatorios/uso terapéutico , Dolor Pélvico/tratamiento farmacológico , Prednisolona/uso terapéutico , Prostatitis/tratamiento farmacológico , Adulto , Enfermedad Crónica , Trastorno Depresivo/etiología , Método Doble Ciego , Humanos , Masculino , Persona de Mediana Edad , Dimensión del Dolor , Dolor Pélvico/psicología , Estudios Prospectivos , Prostatitis/psicología , Escalas de Valoración Psiquiátrica , Síndrome , Resultado del Tratamiento
17.
Nucleic Acids Res ; 35(Database issue): D237-40, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17135202

RESUMEN

The conserved domain database (CDD) is part of NCBI's Entrez database system and serves as a primary resource for the annotation of conserved domain footprints on protein sequences in Entrez. Entrez's global query interface can be accessed at http://www.ncbi.nlm.nih.gov/Entrez and will search CDD and many other databases. Domain annotation for proteins in Entrez has been pre-computed and is readily available in the form of 'Conserved Domain' links. Novel protein sequences can be scanned against CDD using the CD-Search service; this service searches databases of CDD-derived profile models with protein sequence queries using BLAST heuristics, at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi. Protein query sequences submitted to NCBI's protein BLAST search service are scanned for conserved domain signatures by default. The CDD collection contains models imported from Pfam, SMART and COG, as well as domain models curated at NCBI. NCBI curated models are organized into hierarchies of domains related by common descent. Here we report on the status of the curation effort and present a novel helper application, CDTree, which enables users of the CDD resource to examine curated hierarchies. More importantly, CDD and CDTree used in concert, serve as a powerful tool in protein classification, as they allow users to analyze protein sequences in the context of domain family hierarchies.


Asunto(s)
Bases de Datos de Proteínas , Estructura Terciaria de Proteína , Secuencia de Aminoácidos , Animales , Secuencia Conservada , Internet , Filogenia , Estructura Terciaria de Proteína/genética , Proteínas/clasificación , Análisis de Secuencia de Proteína , Interfaz Usuario-Computador
19.
J Biol Chem ; 280(37): 32061-8, 2005 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-16055438

RESUMEN

Myosin VII is an unconventional myosin widely expressed in organisms ranging from amoebae to mammals that has been shown to play vital roles in cell adhesion and phagocytosis. Here we present the first study of the mechanism of action of a myosin VII isoform. We have expressed a truncated single-headed Drosophila myosin VIIB construct in the baculovirus-Sf9 system that bound calmodulin light chains. By using steady-state and transient kinetic methods, we showed that myosin VIIB exhibits a fast release of phosphate and a slower, rate-limiting ADP release from actomyosin. As a result, myosin VIIB will be predominantly strongly bound to actin during steady-state ATP hydrolysis (its duty ratio will be at least 80%). This kinetic pattern is in many respects similar to that of the single-molecule vesicle transporters myosin V and VI. The enzymatic properties of myosin VIIB provide a kinetic basis for processivity upon possible dimerization via the C-terminal domains of the heavy chain. Our experiments also revealed conformational heterogeneity of the actomyosin VIIB complex in the absence of nucleotide.


Asunto(s)
Proteínas de Drosophila/química , Proteínas de Drosophila/fisiología , Cadenas Pesadas de Miosina/química , Cadenas Pesadas de Miosina/fisiología , Miosinas/química , Actinas/química , Actomiosina/química , Adenosina Difosfato/química , Adenosina Trifosfatasas/química , Adenosina Trifosfato/química , Animales , Baculoviridae/metabolismo , Adhesión Celular , Línea Celular , ADN Complementario/metabolismo , Dimerización , Relación Dosis-Respuesta a Droga , Drosophila melanogaster , Electroforesis en Gel de Poliacrilamida , Hidrólisis , Insectos , Cinética , Sustancias Macromoleculares/química , Modelos Químicos , Miosinas/metabolismo , Fagocitosis , Fosfatos/química , Unión Proteica , Conformación Proteica , Isoformas de Proteínas , Estructura Terciaria de Proteína , Factores de Tiempo
20.
Nucleic Acids Res ; 33(Database issue): D192-6, 2005 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-15608175

RESUMEN

The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and PubMed, and can be accessed at http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd. CD-Search, which is available at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi, is a fast, interactive tool to identify conserved domains in new protein sequences. CD-Search results for protein sequences in Entrez are pre-computed to provide links between proteins and domain models, and computational annotation visible upon request. Protein-protein queries submitted to NCBI's BLAST search service at http://www.ncbi.nlm.nih.gov/BLAST are scanned for the presence of conserved domains by default. While CDD started out as essentially a mirror of publicly available domain alignment collections, such as SMART, Pfam and COG, we have continued an effort to update, and in some cases replace these models with domain hierarchies curated at the NCBI. Here, we report on the progress of the curation effort and associated improvements in the functionality of the CDD information retrieval system.


Asunto(s)
Bases de Datos de Proteínas , Estructura Terciaria de Proteína , Proteínas/clasificación , Secuencia de Aminoácidos , Secuencia Conservada , Filogenia , Alineación de Secuencia , Análisis de Secuencia de Proteína , Interfaz Usuario-Computador
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